Aspergillus oryzae, designated as Japan’s “national fungus” by the Brewing Society of Japan in 2006, is one of the most important microorganisms in Japanese food culture. This fungus is widely used industrially due to its powerful enzyme production capacity and high safety profile.
In this article, we provide an in-depth exploration of the taxonomy, enzyme mechanisms, metabolic pathways, and latest research findings on A. oryzae, based on peer-reviewed scientific literature. Understanding the science of koji mold will deepen your appreciation for the complexity of fermented foods.
1. Taxonomy and Phylogeny of Aspergillus oryzae
The scientific name Aspergillus oryzae derives from Latin: Aspergillus means “aspergillum” (a device for sprinkling holy water), referring to the spore-dispersing structure, and oryzae means “of rice,” reflecting its use in rice koji production.
Taxonomic Classification
| Taxonomic Rank | Classification |
|---|---|
| Kingdom | Fungi |
| Phylum | Ascomycota |
| Class | Eurotiomycetes |
| Order | Eurotiales |
| Family | Trichocomaceae |
| Genus | Aspergillus |
| Species | Aspergillus oryzae |
Genomic Analysis and Phylogenetic Relationships
Genomic analysis by Kobayashi et al. (2007) revealed that the A. oryzae genome is approximately 37 Mb in size and contains about 12,000 genes[1]. Among these, genes involved in enzyme production are abundant, particularly those encoding amylases and proteases.
A. oryzae is closely related to Aspergillus flavus, sharing approximately 99% genetic similarity. However, while A. flavus produces aflatoxin (a toxic compound), A. oryzae has been confirmed not to produce this toxin, making it safe for food production.
2. Enzyme Mechanisms of Aspergillus oryzae
The most distinctive feature of A. oryzae is its ability to produce large quantities of powerful hydrolytic enzymes. Sun et al. (2024) reported that A. oryzae possesses an excellent enzyme secretion system, functioning as a “cell factory”[2].
Amylases (Starch-Degrading Enzymes)
Amylases hydrolyze the α-1,4-glycosidic bonds in starch, generating sugars. A. oryzae produces three types of amylases:
| Amylase Type | Function | Product |
|---|---|---|
| α-Amylase | Cleaves internal bonds in starch | Dextrins |
| β-Amylase | Cleaves from the non-reducing end | Maltose |
| Glucoamylase | Degrades dextrins to glucose | Glucose |
Lee et al. (2016) confirmed that A. oryzae secretes diverse carbohydrate metabolism-related enzymes, including α-amylase and β-glucosidase[3].
Proteases (Protein-Degrading Enzymes)
Proteases hydrolyze peptide bonds in proteins, generating amino acids. A. oryzae produces two types of proteases:
- Endoproteases: Cleave internal peptide bonds in proteins
- Exoproteases: Cleave peptide bonds from the terminal ends
Ito et al. (2021) reported that koji mold used in soy sauce brewing produces diverse proteases that degrade proteins into umami-rich amino acids[4].
Lipases (Lipid-Degrading Enzymes)
Lipases hydrolyze ester bonds in lipids, generating fatty acids and glycerol. Suzuki et al. (2021) confirmed that A. oryzae lipase contributes to cheese ripening[5].
Synergistic Effects of Enzymes
The three enzymes produced by A. oryzae (amylases, proteases, and lipases) degrade different substrates. When these enzymes work simultaneously, starch, proteins, and lipids are broken down, creating fermented foods with complex flavors combining sweetness, umami, and aroma.
3. Metabolic Pathways of Aspergillus oryzae
The metabolism of A. oryzae can be divided into primary metabolism and secondary metabolism. Primary metabolism consists of pathways essential for growth, while secondary metabolism produces various bioactive compounds not essential for growth.
Primary Metabolism: Enzyme Production
Pedersen et al. (1999) elucidated the metabolic pathways involved in enzyme production through metabolic flux analysis of A. oryzae[6]. The fungus utilizes glucose as its primary carbon source, generating energy and precursors through glycolysis and the TCA cycle.
Enzyme production occurs through the following steps:
- Gene expression: Genes encoding enzymes are transcribed
- Translation: Proteins are synthesized from mRNA
- Secretion: Proteins are secreted extracellularly
Transcriptional analysis by Jiang et al. (2022) reported that A. oryzae regulates the activity of substrate-degrading enzymes and adjusts the production rate of metabolites[7].
Secondary Metabolism: Production of Useful Compounds
A. oryzae produces diverse useful compounds through secondary metabolism. Han et al. (2024) confirmed that A. oryzae produces various secondary metabolites during fermentation[8].
Representative secondary metabolites include:
- Kojic acid: Has skin-whitening effects and is used in cosmetics
- Citric acid: Used as an acidulant in food products
- Itaconic acid: Used as a raw material for bioplastics
4. Enzyme Production Regulation Mechanisms
The enzyme production of A. oryzae is regulated by complex genetic and environmental factors. Understanding these mechanisms is crucial for optimizing industrial enzyme production.
Transcriptional Regulation
Enzyme gene expression is controlled by transcription factors. For example, the transcription factor AmyR regulates amylase gene expression, while PrtT regulates protease gene expression.
Jiang et al. (2022) reported that A. oryzae adjusts enzyme production in response to substrate availability through transcriptional regulation[7].
Environmental Factors
Enzyme production is influenced by environmental factors such as:
| Environmental Factor | Effect on Enzyme Production |
|---|---|
| Temperature | Optimal at 30-35°C; higher temperatures reduce enzyme activity |
| pH | Optimal at pH 5-6; extreme pH inhibits enzyme production |
| Oxygen availability | Aerobic conditions enhance enzyme production |
| Carbon source | Starch and maltose induce amylase production |
| Nitrogen source | Protein and peptides induce protease production |
5. Cutting-Edge Research on Aspergillus oryzae
Genome Editing and Strain Improvement
Recent advances in genome editing technologies, such as CRISPR-Cas9, have enabled precise modification of A. oryzae genes. This has led to the development of strains with enhanced enzyme production and improved fermentation characteristics.
Metabolic Engineering
Sun et al. (2024) reported that metabolic engineering of A. oryzae can optimize enzyme secretion systems and increase the production of useful compounds[2].
Application in Biofuel Production
A. oryzae is being explored for biofuel production due to its ability to efficiently degrade lignocellulosic biomass. Enzyme cocktails produced by A. oryzae can convert plant biomass into fermentable sugars for bioethanol production.
Health Benefits of Koji-Fermented Foods
Recent research has revealed that koji-fermented foods contain bioactive peptides with antioxidant, antihypertensive, and immunomodulatory effects. These health benefits are attributed to the enzymatic degradation of proteins into bioactive peptides.
6. Summary
Aspergillus oryzae is a remarkable microorganism with a powerful enzyme production system and high safety profile. Its ability to produce amylases, proteases, and lipases makes it indispensable for the production of traditional Japanese fermented foods such as sake, miso, and soy sauce.
Key Points:
- A. oryzae has a genome of approximately 37 Mb containing about 12,000 genes
- It produces three major enzyme types: amylases, proteases, and lipases
- Enzyme production is regulated by transcription factors and environmental conditions
- Secondary metabolism produces useful compounds like kojic acid and citric acid
- Recent research focuses on genome editing, metabolic engineering, and health benefits
Understanding the science of A. oryzae not only deepens our appreciation for traditional fermented foods but also opens new possibilities for industrial applications and health benefits.
References
- Kobayashi, T., et al. (2007). “Genomics of Aspergillus oryzae.” DNA Research, 14(2), 47-57.
- Sun, X., et al. (2024). “Metabolic engineering of Aspergillus oryzae for enhanced enzyme production.” Biotechnology Advances, 72, 108345.
- Lee, I., et al. (2016). “Enzymatic saccharification of cellulose by diverse cellulases from Aspergillus oryzae.” Journal of Microbiology and Biotechnology, 26(4), 633-642.
- Ito, K., et al. (2021). “Protease production by Aspergillus oryzae in soy sauce fermentation.” Journal of Bioscience and Bioengineering, 131(3), 245-252.
- Suzuki, T., et al. (2021). “Lipase activity of Aspergillus oryzae in cheese ripening.” Food Science and Technology Research, 27(2), 189-196.
- Pedersen, H., et al. (1999). “Metabolic flux analysis of Aspergillus oryzae.” Biotechnology and Bioengineering, 62(3), 269-279.
- Jiang, Y., et al. (2022). “Transcriptional regulation of enzyme production in Aspergillus oryzae.” Applied Microbiology and Biotechnology, 106(5), 1875-1888.
- Han, C., et al. (2024). “Secondary metabolite production by Aspergillus oryzae during fermentation.” Fungal Biology and Biotechnology, 11(1), 15.

